openflexure_microscope_server.things.scan_workflows.RasterWorkflow

class documentation

class RasterWorkflow(RegularGridWorkflow[RegularGridSettingsModel]): (source)

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A workflow optimised for snaking around samples.

This workflow generates a list of coordinates in a rectangle, and always moves right across a row, then moves down a row while moving to the starting column (assuming positive dx and dy).

Class Variable display_name Undocumented
Class Variable ui_blurb Undocumented
Class Variable _grid_style Undocumented

Inherited from RegularGridWorkflow:

Method acquisition_routine Autofocus and capture.
Method new_scan_planner Return a new scan planner object.
Method pre_scan_routine Perform these steps before starting the scan.
Method settings_ui Return the UI for the workflow's settings in the scan tab.
Class Variable x_count The number of columns in the scan.
Class Variable y_count The number of rows in the scan.
Method _build_scan_settings Construct the SettingModel for all_settings.
Class Variable _settings_model Undocumented

Inherited from RectGridWorkflow (via RegularGridWorkflow):

Method all_settings Return scan settings and the stitching settings.
Method check_before_start Before starting a scan, check that camera-stage-mapping is set.
Class Variable autofocus_dz The z distance to perform an autofocus in steps.
Class Variable overlap The fraction that adjacent images should overlap in x and y.
Property ready Whether this scanworkflow is ready to start.
Method _calc_displacement_from_overlap Use camera stage mapping to calculate x and y displacement from given overlap.
Method _get_stitching_settings_model Return a stitching settings model based on current settings.
Class Variable _csm Undocumented

Inherited from ScanWorkflow (via RegularGridWorkflow, RectGridWorkflow):

Class Variable save_resolution A tuple of the image resolution to capture.
Method _autofocus_and_capture Autofocus and then capture, this can be used as an acquisition routine.
Class Variable _autofocus Undocumented
Class Variable _cam Undocumented
Class Variable _planner_cls Undocumented
Class Variable _stage Undocumented

Inherited from SmartStackMixin (via RegularGridWorkflow, RectGridWorkflow, ScanWorkflow):

Method create_smart_stack_params Set up the parameters used for all smart stacks in a scan.
Method smart_stack_property_controls Return smart stack property controls for the UI.
Class Variable stack_dz Distance in steps between images in a z-stack.
Instance Variable stack_images_to_save The number of images to save in a stack.
Instance Variable stack_min_images_to_test The minimum number of images to capture in a stack.
Property as_workflow Return self as a ScanWorkflow.
Method _perform_smart_stack Perform acquisition a smart stack.